You might try this mod and see if it has any affect on the results. A longshot but it would be interesting.
https://www.candlepowerforums.com/threads/130963
The mod described above seems to steady out the readings. The problem described in this thread is probably caused by poor power supply bypassing. The charger will attempt to hold the discharge current at the set value but noise entering the circuit will cause the readings to be off and/or fluctuate. BTW, the charger doesn't integrate current readings over time like the MH-C9000. Rather, if you set it for 100 mA after 5 hours the accumulated mAH will be 500 regardless of whether or not the actual discharge rate stayed at 100 mA the whole time. Adding the bypass caps and other mods described causes the instantaneous discharge rate to more closely match the set rate. It will still fluctuate, but the average will be around the set reading.
I'll also add that long term the mods worked out well. Both chargers are still working, there were no meltdowns. The backlights are also still working, although they may have gotten a little dimmer/bluer over time (to be expected with the LEDs I used).