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Thanks for the tips on the continually reinserting when reading 'HIGH' - I tried 3x, but stopped after it didn't work. Also, 'Discharge' of course does nothing @ 400 since there's nothing left in them. Same with Refresh/Analyze.
Keep in mind mc9000 discharges at 1A PWM, which means the battery cannot sustain 1A draw, regardless if you set it to 400 or 200mA, it just spreads the time so to make it on average e.g. 400mA draw. The battery may be perfectly capable to deliver e.g. 500mA. I know that because I also have a Liitokala Lii500 which does CC charge/discharge (no PWM) and any battery that has been rejected by maha on discharge (return 0 mAh), I was able to get all the charge with Lii500, I really mean ALL the charge! So in fact your batteries may be fully charged regardless what maha say. You may think of maha's discharge like that "how much capacity can I get from the battery if discharged at 1A".
These are pitfalls I consider a downside for maha and all PWM chargers regardless of make if they do not adjust the PWM actual current applied. For that reason, I only use maha for charging mostly and any stubborn batteries are treated by Liitokala. I was able to revive several AAA which delivered 0mAh on Maha (recall 1A PWM discharge performed even if I set it to 200mA) and the cycle mode in maha didn't really do anything for the same PWM reason. I then plugged these batteries in Liitokala and after 3-4 cycles they now deliver almost their full capacity, whilst the 1st or 2nd cycle could yield only up to 100mAh. If I had only maha, I would have thrown away some perfectly good batteries. The fun fact is, all these batteries were accepted by maha (no High shown). So after that experience, for actual rescue of batteries I only consider CC chargers.
Regarding your batteries, initial reading of 2.64V in Maha suggests the batteries cannot really provide any sufficient current, the only viable usage is in very low drain applications (remotes, clocks etc), there isn't anything you can do about high internal resistance. If you want to keep using them in low drain applications, you'll either have to get a true CC charger and charge at low rates or a dumb charger and keep using them till they die completely. When maha indicates High reading, this is a good indication the battery cannot longer provide sufficient current for high drain applications; they will get really hot if used in such devices.