An attorney might be able to clarify what I'm about to say, but I'm pretty sure it is up to the manufacturer to prove why your actions voided the warranty. This is never how it works normally, but if you push them hard enough I believe they are required to provide proof that you actions caused the defect - and the proof is not, "the warranty says so".
For example, it is not valid for a company to say in super fine print, "This warranty is void on even days of the month". Any exceptions to the warranty must be able to be defended. Using 2 3.6v R123's could easily damage the electronics, and is a legitmate reason to void a warranty. Just like putting diesel in your unleaded engine voids that warranty too.
If this becomes an issue simply say that you have used several cells in your U2, including a single cell with a max of 3.6/3.7v. Ask them to tell you which component is damaged by using such a cell. My guess is that they couldn't, since so many of use use that cell in our U2s and the only side effect is longer runtimes
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This doesn't mean they will do it, but the level 1 support (Customer Service), has a sheet of DOs and DON'Ts and go by that. However, if you push hard enough, you should be able to get someone who can actually tell you how and why using a 18650 damages the light. If they can't prove why, they can't deny your warranty.
As a note: I'm an flashlight and legal noobie, but this exact issue was discussed in a law class I took several years back. Maybe someone with more knowledge in both subjects can chime in, but I wanted to point this out as a possible option for you.