I bought a two stage D-mini switch with my dark brown MRV from Matt some time back. When installed, the D-mini switch's low setting brightness is identical to that of the light engine's twist low setting. I read in other post's that the D-mini switch provided a 3rd (lower) brightness level, but for me this is not the case.
That's odd, because mine works fine the new dark brown MRV. Note that switching the body switch when the tailcap 2-stage D-mini switch is on low has no effect on output. Switching the body switch when the D-mini switch is on Hi functions as if you were using the default single-stage switch.
With the D-mini switch on low, my output readings are much lower than the body switch low (about 1/2 the lux @1m on primaries, and about 1/3 the lux @1m on 18650).
I seem to recall hearing that some of the newer dark brown MRVs have a lower low mode on the body switch, due to consumer demand. If that is the case, and it were to be the same resistance as the D-mini 2-stage switch, then it may explain your results. Are you able to measure the lux throw of your light?