brighterisbetter,
The adapter design can accommodate any length of cell when coupled with the right length support rods, however, the support rods of the adapter have been cut to length based on fitment for AW protected cells, and will limit the use of certain cells if they are a little on the long or short side. If the adapter is not collapsing down far enough to make contact with a shorter 18650 cell, you just need shorter support rods. I'd be more than happy to send you some. PM me for further instruction. Alternatively, the rods can be removed and ground down to a shorter length if you have the means to do so, but I am more than happy to just send whatever is needed to make your adapter work with the cells you want to be able to use with it.
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Bxstylez,
Any charger that can charge LiCo ("regular" li-ion, like AWs) cells, should charge LiMn (Emoli and other "safe chemistry 3.7V cells) cells reasonably well, but In my experience, the WF-139 seems to heat up the Emoli cells during charging, where my DSD does not. I'm using a faster Nokia power supply on my DSD that nearly matches the speed of the 139, so there is definitely something different going on about the way the 139 charges, and I'm not so sure if it's the best thing for any li-ion cell, regardless of chemistry. I wouldn't go so far as to say a WF-139 shouldn't be used to charge these cells, but I personally would suggest a Pila IBC if you can afford to get one.
Eric