Exactly. That charger is made to charge packs of two cells in series. Do not attempt to charge only one cell, or you'll damage it (and possibly set it on fire). Wire two in series and it should be fine. Emphasis on "should" - I don't know how the Storm Launcher charges its battery.
Note that a series pack should be balanced. Does your charger have a balancer? If not, I encourage you to buy a proper single-cell charger - there are very cheap ones on DX - instead of adapting this one.