Few things to consider:
with 11 cells in series, you'll potentially have a peak fresh off the charger voltage in excess of 16V, make sure the devices you are intending to power are going to be okay with this, or revert to a 10 cell series design.
For the sake of convenience, I think charging it slowly as an entire pack as Mr. happy said would be acceptable with the slow charge rate, HOWEVER; build the pack in such a way that each series string can be isolated and removed if need be. Once a year or once every 6 months or so, it would be best to run each of those individual series packs on a few exercise cycles followed by it's own independent 0.1C for 16 hour balance charge. A charger that could give you some information about the amount of charge taken, or energy removed during a discharge cycle would be ideal to weed out under-performing strings. Have a spare string or 3 separate of the whole battery that you exercise once and awhile to keep on hand for a swap-in-partial-pack-repair-situation.
Considering all the hassle involved with building the pack, testing cells, wiring things up and somehow shoe-horning it into some sort of fairly rugged enclosure, followed by the enormous amount of work that's going to be required to keep the thing properly exercised, balanced and working, even if I were getting the cells for FREE I wouldn't bother with this project. Maybe if it were D or F cells in smaller quantity I might consider it...
FYI: you can buy a brand new 12V ~50AH deep cycle marine gel cell battery for ~$150, probably less if you look around...
Assuming you were getting 200 smuracells for free, after considering all the materials you will need to build this pack up in a "nice" build, (shrink-wrapping individual strings into packs, installing plugs on all individual series packs, building a "bus-bar" unit with female plugs for all the strings to plug into to that wired them up in parallel, some large "lug" connections, plastic enclosure, various fasteners, threaded rods, nuts etc....)... I'd be willing to bet you are going to have at least $75 bare minimum in materials not associated with the cells just to build this. That's assuming some really serious wheelin and deelin and maybe a barter or 2 swung up in there....
Is it going to be worth it?
Spend the time and money on a LiFeP04 pack if you want a serious upgrade. Building this AA pack will need to be looked at from the perspective of "because I can" and not necessarily "because I should." It'll be a fun project.
-Eric