Hello FlashSpyJ,
My thought was that they might be new cells that have been in storage for some time. If this were the case, the electrolyte may have migrated slightly within the cell, causing hotter than normal temperatures during charging.
If you have the capability, you may consider doing a discharge, followed by a 0.1C charge for 16 hours. If you can't do that, you will have to get some cycles on the cells. Keep an eye on the last few minutes of the charge and pull the cells when they start to heat up.
If they are older cells, heat usually means higher internal resistance, so they may be wearing out, however, this does not sound like it's the case here.
At any rate, for the time being you will have to become "smarter" than your charger. If your charger had an option of different charge rates, you could select a little slower rate, but that does not seem to be an option.
Be advised that until you get this straightened out, you should limit the use of the cells to around 80% of the usual runtime. Until the cells can go through a full recharge cycle without getting too hot, you run the risk of your cells being out of balance with each other. In a multi cell application, cells that are out of balance run the risk of reverse charging.
Tom