Charging in series and needs a balancer.
This is charging in parallel:-
Connect both positive terminals of the batteries together then connect both negative terminals together. Now connect the positive on the charger to the positive on a battery and a negative on the charger to the negative on the battery.
So, two 4.2v 2200mah batteries in parallel is the same as one 4.2v 4400mah battery (parallel keeps the same voltage but doubles the capacity). Your charge would be something like 2200mah terminating at 4.2v for this set up.
Two 4.2v 2200mah batteries in series is the same as one 8.4v 2200mah battery (series doubles the voltage but leaves capacity the same). Charging would be something like 1100mah terminating at 8.4v for this set up.
You can use higher charge rates - 0.8c is typical for 18650 cells (so 1760mah on a 2200mah 18650)
I've included a diagram illustrating series and parallel.